Information for 4-CGGGTTTGDCAGGGCC (Motif 4)

A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C
Reverse Opposite:
A T C G A C T G A T G C A G T C A G T C A C G T C T A G G T A C T A G C C T G A C T G A C G T A A T G C A T G C A G T C A T C G
p-value:1e-12
log p-value:-2.892e+01
Information Content per bp:1.798
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.6 +/- 28.9bp
Average Position of motif in Background55.6 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0140.1_Pknox1/Jaspar

Match Rank:1
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CGGGTTTGDCAGGGCC--
--GGATTGACAGGTCNTT
 A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C A C G T A C G T
A C G T A C G T A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:2
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CGGGTTTGDCAGGGCC
GGGGCTYGKCTGGGA-
 A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:3
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CGGGTTTGDCAGGGCC--
--NNATTGACAGGTGCTT
 A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C A C G T A C G T
A C G T A C G T T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:CGGGTTTGDCAGGGCC-------
---------CAGGCCNNGGCCNN
 A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CGGGTTTGDCAGGGCC
-----TTGACAGC---
 A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C
A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:6
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CGGGTTTGDCAGGGCC--
--GTATTGACAGGTNNTT
 A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C A C G T A C G T
A C G T A C G T C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CGGGTTTGDCAGGGCC--
--NTATTGACAGGTNNTN
 A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C A C G T A C G T
A C G T A C G T C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:CGGGTTTGDCAGGGCC
--------CTAGGCCT
 A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:9
Score:0.48
Offset:1
Orientation:forward strand
Alignment:CGGGTTTGDCAGGGCC
-GGTCANYTGAGGWCA
 A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.48
Offset:10
Orientation:forward strand
Alignment:CGGGTTTGDCAGGGCC--
----------AGGCCTNG
 A T G C A C T G A T C G A T C G G C A T G A C T A G C T A T C G C A T G A G T C C G T A A C T G A C T G A T C G G T A C A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G