Information for 7-YYTCAGARCTTMT (Motif 8)

A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T
Reverse Opposite:
C G T A A C T G C G T A C T G A C A T G A G T C A C G T A G T C C G A T A C T G C G T A C T G A C T G A
p-value:1e-12
log p-value:-2.923e+01
Information Content per bp:1.869
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.9 +/- 17.5bp
Average Position of motif in Background49.2 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX21/MA0690.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:YYTCAGARCTTMT
-TTCACACCTT--
 A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T
A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:YYTCAGARCTTMT
CTTCACACCTA--
 A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T
A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--YYTCAGARCTTMT--
NATTTAAGTACTTANNA
 A C G T A C G T A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PB0013.1_Eomes_1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---YYTCAGARCTTMT-
NNTTTTCACACCTTNNN
 A C G T A C G T A C G T A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

EOMES/MA0800.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--YYTCAGARCTTMT
NTTTTCACACCTT--
 A C G T A C G T A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-YYTCAGARCTTMT--
CTTTAAGTACTTAATG
 A C G T A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T A C G T A C G T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

TBX15/MA0803.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:YYTCAGARCTTMT
--TCACACCT---
 A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T
A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:YYTCAGARCTTMT
--TCACACCT---
 A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T
A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:YYTCAGARCTTMT
TTTCACACCT---
 A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:YYTCAGARCTTMT
-TTAAGTGCTT--
 A G C T A G C T A C G T A G T C C G T A A C T G C G T A C T A G G A T C A G C T A C G T G T A C A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T