Information for 6-GAGCTCCCTCTGC (Motif 3)

T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C
Reverse Opposite:
A C T G T A G C C T G A C T A G C G T A T A C G C T A G A T C G G T C A A C T G A G T C A G C T A G T C
p-value:1e-15
log p-value:-3.538e+01
Information Content per bp:1.772
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif45.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets47.3 +/- 27.2bp
Average Position of motif in Background43.7 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAGCTCCCTCTGC
--GCTCCG-----
 T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C
A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGCTCCCTCTGC
CAGCC--------
 T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGCTCCCTCTGC--
GACCCCCCGCTGCGC
 T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C A C G T A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GAGCTCCCTCTGC----
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGCTCCCTCTGC-
GACCCCCCGCTGTG
 T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GAGCTCCCTCTGC
NNNGGGGCGCCCCCNN-
 A C G T A C G T A C G T A C G T T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGCTCCCTCTGC--
GACCCCCCGCTGTGC
 T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GAGCTCCCTCTGC-
----ACCATCTGTT
 T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C A C G T
A C G T A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GAGCTCCCTCTGC
---VBSYGTCTGG
 T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GAGCTCCCTCTGC-
----GCCATCTGTT
 T C A G C T G A A C T G G T A C A C G T A T G C A G T C A G T C C G A T A G T C A G C T A T C G A G T C A C G T
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T