Information for 10-CAGACTTAAGAGC (Motif 12)

A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A G T C A C G T A C T G
p-value:1e-8
log p-value:-1.938e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.0 +/- 29.8bp
Average Position of motif in Background39.9 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CAGACTTAAGAGC-
----CTYRAGTGSY
 A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CAGACTTAAGAGC-
----BTBRAGTGSN
 A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CAGACTTAAGAGC
CAAATCCAGACATCACA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CAGACTTAAGAGC--
-----TTGAGTGSTT
 A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

ISL2/MA0914.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CAGACTTAAGAGC
-----TTAAGTGC
 A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTTAAGAGC
BCAGACWA------
 A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CAGACTTAAGAGC-
-----TTAAGTGGN
 A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx2-5/MA0063.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CAGACTTAAGAGC
-----TTAATTG-
 A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CAGACTTAAGAGC-
-----TTAAGTGGT
 A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTTAAGAGC
CCAGACAG------
 A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T