Information for 3-CKCCCCTVSWGGGGRC (Motif 3)

A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C
Reverse Opposite:
A T C G A G C T A G T C G T A C G A T C A T G C G C A T A T G C A G C T T C G A A C T G C T A G A T C G C T A G G T A C T C A G
p-value:1e-14
log p-value:-3.373e+01
Information Content per bp:1.668
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif14.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.9 +/- 17.8bp
Average Position of motif in Background52.9 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0101.1_Zic1_1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CKCCCCTVSWGGGGRC
--CCCCCCCGGGGGNN
 A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C
A C G T A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CKCCCCTVSWGGGGRC-------
---GCCASCAGGGGGCGCYVNNG
 A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CKCCCCTVSWGGGGRC
TTCCCCCTAC-------
 A C G T A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CKCCCCTVSWGGGGRC
-CCCCCCCGGGGGGGT
 A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C
A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CKCCCCTVSWGGGGRC
-CCCCCTGCTGTG---
 A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CKCCCCTVSWGGGGRC
-CCCCCCCGGGGGGGT
 A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C
A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CKCCCCTVSWGGGGRC
ATCCCCGCCCCTAAAA-----
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C
G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A A C G T A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CKCCCCTVSWGGGGRC
-TCCCCA---------
 A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C
A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CKCCCCTVSWGGGGRC
NTCCCCTCAGGGANT-
 A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C
G A C T C G A T G A T C A T G C G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A C G C G T A G C T A G C A T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CKCCCCTVSWGGGGRC
TAGCGCCCCCTGGTGGCCA-
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A T G C A G T C A G T C A G C T T C G A A T C G C G T A T A C G C A T G C A T G A C T G C T G A A T G C
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T