Information for 7-CACCADGTACTGC (Motif 10)

A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G G T A C C G T A C T A G A C G T G T C A A G T C G A T C A G C T A T C G C T A G A C G T A C T G
p-value:1e-9
log p-value:-2.141e+01
Information Content per bp:1.795
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif16.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.4 +/- 27.8bp
Average Position of motif in Background47.8 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CACCADGTACTGC---
ACTCCAAGTACTTGGAA
 A C G T A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CACCADGTACTGC---
CNTTAAGTACTTAANG
 A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CACCADGTACTGC----
-----GGGATTGCATNN
 A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CACCADGTACTGC
GRACAGWMTGTYCTB-
 A C G T A C G T A C G T A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G A C G T

NR3C1/MA0113.3/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CACCADGTACTGC
NGGAACATNATGTACCC-
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C A C G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CACCADGTACTGC-
TGGCCANNNNNGGAACTGCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C A C G T
G C A T C T A G C A T G G A T C G A T C C T G A G A T C G C A T A C T G A G C T C A G T C T A G C A T G G C T A C G T A A G T C C G A T C T A G A T G C G C T A

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CACCADGTACTGC
GVACAGNMTGTYCTB-
 A C G T A C G T A C G T A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G A C G T

Ar/MA0007.3/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CACCADGTACTGC
GGGAACACGGTGTACCC-
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CACCADGTACTGC---
NATTTAAGTACTTANNA
 A C G T A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0116.1_Nkx2-9/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CACCADGTACTGC---
NATTTAAGTACTTNAAA
 A C G T A G T C G T C A A G T C A T G C C T G A C T A G A C T G A C G T C G T A A G T C A C G T A C T G A G T C A C G T A C G T A C G T
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A