Information for 7-AGCCAGGCCTGSC (Motif 9)

T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C
Reverse Opposite:
A C T G T A G C G T A C G T C A C T A G A T C G A T G C A G T C A G C T C A T G A C T G G T A C A G C T
p-value:1e-9
log p-value:-2.118e+01
Information Content per bp:1.675
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif110.9
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets50.8 +/- 25.8bp
Average Position of motif in Background48.3 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:AGCCAGGCCTGSC
--CNAGGCCT---
 T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C
A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:AGCCAGGCCTGSC
--CTAGGCCT---
 T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C
A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGCCAGGCCTGSC
GGGGCCGAGGCCTG--
 A C G T A C G T A C G T T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAGGCCTGSC
SCAGYCADGCATGAC
 A C G T A C G T T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCCAGGCCTGSC-
GCAGCCAAGCGTGACN
 A C G T A C G T T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PB0180.1_Sp4_2/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGCCAGGCCTGSC---
-CAAAGGCGTGGCCAG
 T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C A C G T A C G T A C G T
A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------AGCCAGGCCTGSC
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAGGCCTGSC
ATGCCCGGGCATGT-
 A C G T A C G T T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AGCCAGGCCTGSC--
-------CTTGGCAA
 T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGCCAGGCCTGSC-
--MKGGGYGTGGCC
 T C G A A C T G T G A C G T A C T C G A C T A G A T C G A T G C A G T C C A G T A C T G A T C G T A G C A C G T
A C G T A C G T G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C