Information for 5-TCHCTTGGCA (Motif 4)

C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A
Reverse Opposite:
G C A T A C T G G T A C G A T C C T G A C T G A A C T G C A G T A C T G G T C A
p-value:1e-13
log p-value:-3.108e+01
Information Content per bp:1.753
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.89%
Number of Background Sequences with motif516.7
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets56.0 +/- 26.6bp
Average Position of motif in Background49.5 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:TCHCTTGGCA--
--NNTTGGCANN
 C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:TCHCTTGGCA--
---NTTGGCANN
 C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:TCHCTTGGCA-
---CTTGGCAA
 C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.77
Offset:4
Orientation:forward strand
Alignment:TCHCTTGGCA
----TTGGCA
 C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TCHCTTGGCA
WDNCTGGGCA
 C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

EBF1/MA0154.3/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TCHCTTGGCA--
ANTCCCTNGGGAAT
 A C G T A C G T C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A A C G T A C G T
C T G A C A G T G A C T G T A C A G T C A G T C G C A T C G A T C T A G T C A G T A C G C T G A T G C A G A C T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TCHCTTGGCA-
--GGTTGGCAT
 C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCHCTTGGCA
NGTCCCNNGGGA
 A C G T A C G T C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A
C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------TCHCTTGGCA
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCHCTTGGCA
GTCACGTGGM-
 A C G T C A G T T G A C G T C A G T A C G A C T G A C T C T A G C A T G T G A C C G T A
T C A G C A G T A G T C C G T A A T G C T C A G G C A T A C T G A C T G T G A C A C G T