Information for 5-CAGRTGCTGAACA (Motif 10)

G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C G T A G T C C G T A A C T G A G T C C G T A A G C T A G T C A C G T A C T G
p-value:1e-9
log p-value:-2.141e+01
Information Content per bp:1.941
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.5 +/- 33.3bp
Average Position of motif in Background76.3 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CAGRTGCTGAACA
NNNNAGCAGCTGCTGAN--
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAGRTGCTGAACA
NNCAGGTGTN-----
 A C G T A C G T G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A
G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T A C G T A C G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAGRTGCTGAACA
NNCAGGTGCG-----
 A C G T A C G T G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGRTGCTGAACA
AATTTGCTGAC--
 G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGRTGCTGAACA
ATCCACAGGTGCGAAAA-
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CAGRTGCTGAACA
NNVVCAGCTGBN-----
 A C G T A C G T A C G T A C G T G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAGRTGCTGAACA
SDGCAGGTGCNS----
 A C G T A C G T A C G T G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T A C G T

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGRTGCTGAACA-
AAAWWTGCTGACWWD
 A C G T G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A A C G T
C T G A C G T A C G T A G C T A G C A T G C A T T C A G G T A C G C A T C A T G C G T A A T G C G C A T G C A T C A T G

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGRTGCTGAACA------
VCAKCTGGNNNCCAGMTGBN
 A C G T G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

Mafb/MA0117.2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGRTGCTGAACA
AAAATGCTGACT-
 G T A C C G T A A C T G C T G A A C G T A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T A C G T