Information for 3-GSAMTMTTCWGCC (Motif 3)

A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G T A T A C G C G T A C G T A A C G T C G T A A C G T A C G T A T G C A G T C
p-value:1e-8
log p-value:-1.896e+01
Information Content per bp:1.867
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets72.7 +/- 4.1bp
Average Position of motif in Background36.2 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GSAMTMTTCWGCC
-GAATATTCAT--
 A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GSAMTMTTCWGCC
NNTNNCAATATTAG---
 A C G T A C G T A C G T A C G T A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GSAMTMTTCWGCC
NNTNNCAATATTAG---
 A C G T A C G T A C G T A C G T A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GSAMTMTTCWGCC
CCTTGCAATTTTTNN--
 A C G T A C G T A C G T A C G T A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GSAMTMTTCWGCC
NNGTANTGTTTTNC-
 A C G T A C G T A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C
G A C T C T G A C A T G C G A T G T C A T G C A G C A T A T C G G A C T G C A T G C A T G C A T A T C G T G A C A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GSAMTMTTCWGCC
NNGCACCTTTCTCC-
 A C G T A C G T A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------GSAMTMTTCWGCC-
NNTTCTGGAANNTTCTAGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C A C G T
A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.50
Offset:8
Orientation:forward strand
Alignment:GSAMTMTTCWGCC----
--------CTGCCCGCA
 A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GSAMTMTTCWGCC----
--ANATTTTTGCAANTN
 A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GSAMTMTTCWGCC
GGGAATTTCC----
 A C G T A C T G A T C G C G T A G T C A A C G T G T C A A C G T A C G T A G T C C G A T C T A G A G T C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T