Information for 21-AGTTGAGAAGGAACAA (Motif 28)

C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C G T A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T
p-value:1e-6
log p-value:-1.425e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.3 +/- 35.5bp
Average Position of motif in Background32.7 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGTTGAGAAGGAACAA
KGTTGCTAGGMAACA-
 C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------AGTTGAGAAGGAACAA-
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:AGTTGAGAAGGAACAA---
---------GGAACAAAGR
 C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

TBX20/MA0689.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGTTGAGAAGGAACAA
TAGGTGTGAAG------
 A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.53
Offset:7
Orientation:forward strand
Alignment:AGTTGAGAAGGAACAA-------
-------AATGAACAATGGAATT
 C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AGTTGAGAAGGAACAA
------CCAGGAACAG
 C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:AGTTGAGAAGGAACAA---
---------RNAACAATGG
 C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AGTTGAGAAGGAACAA------
-----NNNNNGAACAATTGANN
 C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.52
Offset:11
Orientation:reverse strand
Alignment:AGTTGAGAAGGAACAA-
-----------AACAAT
 C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AGTTGAGAAGGAACAA------
-----TCACGGAACAATAGGTG
 C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G