Information for 8-AACTGCCAAKAGGAAG (Motif 11)

G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
Reverse Opposite:
G T A C A C G T A C G T T A G C G A T C A C G T T G A C A C G T A C G T A C T G A C T G A G T C C G T A C T A G A C G T C A G T
p-value:1e-11
log p-value:-2.736e+01
Information Content per bp:1.747
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.5 +/- 30.5bp
Average Position of motif in Background51.4 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AACTGCCAAKAGGAAG
-GGTGCCAAGT-----
 G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AACTGCCAAKAGGAAG
--TTGCCAAG------
 G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AACTGCCAAKAGGAAG
-CGTGCCAAG------
 G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AACTGCCAAKAGGAAG
---TGCCAA-------
 G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AACTGCCAAKAGGAAG
--CTGCCCGCA-----
 G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AACTGCCAAKAGGAAG
CCAACTGCCA--------
 A C G T A C G T G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AACTGCCAAKAGGAAG
CGACCAACTGCCATGC-----
 A C G T A C G T A C G T A C G T A C G T G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C A C G T A C G T A C G T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AACTGCCAAKAGGAAG
AAAGACCTGTCAATAC----
 A C G T A C G T A C G T A C G T G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C A C G T A C G T A C G T A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AACTGCCAAKAGGAAG
CCAACTGCCA--------
 A C G T A C G T G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AACTGCCAAKAGGAAG
AACTAGCTGTCAATAC----
 A C G T A C G T A C G T A C G T G T C A T C G A G A T C A C G T A C T G A G T C A G T C G T C A C G T A A C T G C G T A C T A G A C T G T C G A G T C A C A T G
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C A C G T A C G T A C G T A C G T