Information for 6-CCTCTTATGGCCA (Motif 7)

G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C G T A C C G T A A G C T G T C A C G T A A C T G C G T A A C T G A C T G
p-value:1e-12
log p-value:-2.940e+01
Information Content per bp:1.935
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.6 +/- 24.4bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------CCTCTTATGGCCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CCTCTTATGGCCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCTCTTATGGCCA
CCTTTTATAGNC-
 G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTCTTATGGCCA
--TTTTATGGCTN
 G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

SRF/MA0083.3/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTTATGGCCA
TGNCCATATATGGTCA
 A C G T A C G T A C G T G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTCTTATGGCCA
CCATATATGGNA-
 G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTCTTATGGCCA
-NTTTTATGAC--
 G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTTATGGCCA
TGWCCTCARNTGACC-
 A C G T A C G T A C G T G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTTATGGCCA--
NAATTTTATTACCNNN
 A C G T G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCTCTTATGGCCA
--TTTTATTGC--
 G T A C G T A C A C G T A G T C A C G T A C G T C T G A A C G T A C T G A C T G A G T C A G T C C G T A
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T