Information for 5-CCCGTCAGGCTCC (Motif 3)

A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A T C A G A G T C A G T C C G A T A T C G C T G A A T G C C T A G A C T G C T A G
p-value:1e-10
log p-value:-2.515e+01
Information Content per bp:1.838
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.8 +/- 25.7bp
Average Position of motif in Background53.5 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.60
Offset:8
Orientation:forward strand
Alignment:CCCGTCAGGCTCC-
--------GCTCCG
 A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCCGTCAGGCTCC
-CTGTCTGG----
 A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCCGTCAGGCTCC
VBSYGTCTGG----
 A C G T A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCCGTCAGGCTCC-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCCGTCAGGCTCC-
-CTGTCTGTCACCT
 A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCCGTCAGGCTCC----
---GTCACGCTCNCTGA
 A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

PLAG1/MA0163.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCCGTCAGGCTCC
CCCCCTTGGGCCCC
 A C G T A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----CCCGTCAGGCTCC
TACGCCCCGCCACTCTG-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CCCGTCAGGCTCC
TGCCCTGAGGGCA--
 A C G T A C G T A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:CCCGTCAGGCTCC-
----NRRGGGTCTT
 A G T C A G T C A G T C A T C G A G C T A T G C C G T A A C T G A C T G A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T