Information for 7-AGGAATATTCTAC (Motif 13)

C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A G T C A C G T
p-value:1e-2
log p-value:-6.563e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.0 +/- 0.0bp
Average Position of motif in Background65.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGAATATTCTAC
ATGAATATTC---
 C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

HSF1/MA0486.2/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGGAATATTCTAC--
--GAACGTTCTAGAA
 C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AGGAATATTCTAC--
NNTTCTGGAANNTTCTAGAA
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T
A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A

HSF2/MA0770.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGAATATTCTAC--
--GAANGTTCTAGAA
 C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGAATATTCTAC
ATGMATATDC---
 C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGAATATTCTAC--
TAGAANVTTCTAGAA
 C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T
G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

HSF4/MA0771.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGGAATATTCTAC--
--GAANNTTCTAGAA
 C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGAATATTCTAC
NCTGGAATGC-----
 A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C
G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGGAATATTCTAC
CTCATGAATATTCAT-
 A C G T A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGGAATATTCTAC
NTGGAATGTN----
 A C G T C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A G T C A C G T C G T A A G T C
C T G A G C A T C T A G T C A G G C T A C G T A G C A T A C T G G A C T A C T G A C G T A C G T A C G T A C G T