Information for 4-GGCAGGCAGACAG (Motif 10)

A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
Reverse Opposite:
A G T C A G C T A C T G A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C T G A G T C A T G C
p-value:1e-5
log p-value:-1.287e+01
Information Content per bp:1.864
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif4.41%
Number of Background Sequences with motif18.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.4 +/- 21.5bp
Average Position of motif in Background49.0 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGGCAGACAG
TGGCAGNCTGCCAG
 A C G T A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GGCAGGCAGACAG
-----CCAGACAG
 A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GGCAGGCAGACAG--
-----CCAGACRSVB
 A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCAGGCAGACAG-----
GGAAGGAAGGAAGGAAGG
 A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGCAGGCAGACAG
AGGTGNCAGACAG
 A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCAGACAG---
-SCAGYCADGCATGAC
 A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGCAGGCAGACAG
--AAGGCAAGTGT
 A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCAGGCAGACAG
TBGCACGCAA----
 A C G T A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGCAGGCAGACAG
GGTTGGCAT----
 A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGCAGGCAGACAG
TNNGGGCAG----
 A T C G A C T G G T A C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T