Information for 4-TGGCAAGGAG (Motif 9)

G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G
Reverse Opposite:
A T G C A G C T A G T C G T A C A G C T G A C T A C T G G A T C A G T C C T G A
p-value:1e-9
log p-value:-2.115e+01
Information Content per bp:1.830
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.67%
Number of Background Sequences with motif284.9
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets46.0 +/- 25.3bp
Average Position of motif in Background50.5 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGGCAAGGAG
TTGCCAAG---
 A C G T G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAAGGAG
NTTGGCANN---
 A C G T A C G T G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGGCAAGGAG
TTGGCA-----
 A C G T G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAAGGAG
NNTTGGCANN---
 A C G T A C G T A C G T G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGGCAAGGAG
AAGGCAAGTGT
 A C G T G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAAGGAG
ARNTGACA-----
 A C G T A C G T A C G T G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAAGGAG
RHTGWCAR----
 A C G T A C G T G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAAGGAG
GGTTGGCAT----
 A C G T A C G T A C G T G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGGCAAGGAG----
TGGCACCATGCCAA
 G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G A C G T A C G T A C G T A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

PB0203.1_Zfp691_2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGGCAAGGAG-------
NTNNNAGGAGTCTCNTN
 G A C T A C T G C A T G G T A C C T G A T C G A A C T G A C T G C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A