Information for 7-AAGGCAACGC (Motif 11)

C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C
Reverse Opposite:
T C A G A G T C A T C G G C A T A C G T C T A G A T G C A G T C A G C T A C G T
p-value:1e-11
log p-value:-2.692e+01
Information Content per bp:1.848
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.88%
Number of Background Sequences with motif85.8
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets40.1 +/- 22.0bp
Average Position of motif in Background53.2 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGGCAACGC
AAAAGTCAA---
 A C G T A C G T C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAGGCAACGC
CAAGGHCANV-
 A C G T C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGGCAACGC-
AAGGCAAGTGT
 C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAGGCAACGC
AAGGTCAC--
 C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AAGGCAACGC
GTTGCCATGGCAAC--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

RFX5/MA0510.2/Jaspar

Match Rank:6
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------AAGGCAACGC
NGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AAGGCAACGC
TTGCCATGGCAACN-
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------AAGGCAACGC
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AAGGCAACGC
BTCAAGGTCA---
 A C G T A C G T A C G T C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----AAGGCAACGC
TTGCCATGGCAACC-
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C T G A T C G G A T C C G T A C G T A A T G C A C T G A G T C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T