Information for 6-AGAGCGGCTA (Motif 20)

C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A
Reverse Opposite:
G A C T C T G A A C T G A G T C A G T C C T A G A G T C A C G T A G T C A G C T
p-value:1e-8
log p-value:-1.932e+01
Information Content per bp:1.879
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif62.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets58.0 +/- 25.1bp
Average Position of motif in Background49.0 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGAGCGGCTA
CTTGAGTGGCT-
 A C G T A C G T C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGAGCGGCTA-----
GGNGCGNCTGTTNNN
 C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A A C G T A C G T A C G T A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGAGCGGCTA
TTGAGTGSTT-
 A C G T C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AGAGCGGCTA
-----NGCTN
 C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGAGCGGCTA
BTBRAGTGSN--
 A C G T A C G T C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGAGCGGCTA
TTRAGTGSYK-
 A C G T C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGAGCGGCTA--
NNAGCAGCTGCT
 C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A A C G T A C G T
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGAGCGGCTA
CGGAGC-----
 A C G T C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGAGCGGCTA--
--AGCAGCTGCT
 C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A A C G T A C G T
A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AGAGCGGCTA-----
NNNNAGCAGCTGCTGAN
 A C G T A C G T C T G A A C T G C G T A A C T G G A T C A C T G A C T G A G T C A G C T C T G A A C G T A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G