Information for 9-GSTATGAATC (Motif 5)

A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C
Reverse Opposite:
A C T G C G T A A G C T C G A T G A T C G T C A C G A T C G T A A T G C G T A C
p-value:1e-14
log p-value:-3.264e+01
Information Content per bp:1.743
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.64%
Number of Background Sequences with motif389.5
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets51.2 +/- 26.9bp
Average Position of motif in Background50.4 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GSTATGAATC--
GGCCATAAATCAC
 A C G T A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GSTATGAATC-
GGCCATAAATCA
 A C G T A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GSTATGAATC-
GGCCATAAATCA
 A C G T A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GSTATGAATC-
GCCATAAATCA
 A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GSTATGAATC---
--AATGTATCAAT
 A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GSTATGAATC---
NAGATWNBNATCTNN
 A C G T A C G T A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C A C G T A C G T A C G T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GSTATGAATC-
RGCCATYAATCA
 A C G T A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GSTATGAATC-
-TCATCAATCA
 A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C A C G T
A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PB0163.1_Six6_2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GSTATGAATC-----
ATGGGATATATCCGCCT
 A C G T A C G T A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GSTATGAATC----
----CAAATCACTG
 A C T G T A C G C G A T G C T A A C G T C T A G C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G