p-value: | 1e-7 |
log p-value: | -1.718e+01 |
Information Content per bp: | 1.917 |
Number of Target Sequences with motif | 4.0 |
Percentage of Target Sequences with motif | 0.56% |
Number of Background Sequences with motif | 2.7 |
Percentage of Background Sequences with motif | 0.01% |
Average Position of motif in Targets | 40.2 +/- 21.2bp |
Average Position of motif in Background | 28.2 +/- 11.3bp |
Strand Bias (log2 ratio + to - strand density) | 1.0 |
Multiplicity (# of sites on avg that occur together) | 1.25 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer
Match Rank: | 1 |
Score: | 0.71 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | CTGGCTGGCTGGC- CTGGCAGNCTGCCA |
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PB0029.1_Hic1_1/Jaspar
Match Rank: | 2 |
Score: | 0.63 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | CTGGCTGGCTGGC----- --NGTAGGTTGGCATNNN |
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Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer
Match Rank: | 3 |
Score: | 0.60 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---CTGGCTGGCTGGC GTCATGCHTGRCTGS- |
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Hic1/MA0739.1/Jaspar
Match Rank: | 4 |
Score: | 0.58 |
Offset: | 6 |
Orientation: | reverse strand |
Alignment: | CTGGCTGGCTGGC-- ------GGTTGGCAT |
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Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer
Match Rank: | 5 |
Score: | 0.58 |
Offset: | 4 |
Orientation: | forward strand |
Alignment: | CTGGCTGGCTGGC ----TWGTCTGV- |
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Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer
Match Rank: | 6 |
Score: | 0.57 |
Offset: | 4 |
Orientation: | forward strand |
Alignment: | CTGGCTGGCTGGC ----CTGTCTGG- |
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NFIC::TLX1/MA0119.1/Jaspar
Match Rank: | 7 |
Score: | 0.56 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | CTGGCTGGCTGGC- TTGGCATGGTGCCA |
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NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer
Match Rank: | 8 |
Score: | 0.55 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -CTGGCTGGCTGGC-- CTTGGCANNNTGCCAA |
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NFIX/MA0671.1/Jaspar
Match Rank: | 9 |
Score: | 0.55 |
Offset: | 7 |
Orientation: | reverse strand |
Alignment: | CTGGCTGGCTGGC--- -------NTTGGCANN |
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SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar
Match Rank: | 10 |
Score: | 0.55 |
Offset: | 4 |
Orientation: | forward strand |
Alignment: | CTGGCTGGCTGGC---- ----CTGTCTGTCACCT |
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