Information for 7-CTCMTGSCMAAAG (Motif 9)

T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G
Reverse Opposite:
A G T C A G C T C A G T G A C T A C T G C A T G T A C G A G T C G T C A C A T G A T C G C T G A A C T G
p-value:1e-9
log p-value:-2.137e+01
Information Content per bp:1.674
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif103.0
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets44.6 +/- 29.3bp
Average Position of motif in Background48.8 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTCMTGSCMAAAG
--CTTGGCAA---
 T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTCMTGSCMAAAG
---CTGCCCGCA-
 T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G
A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTCMTGSCMAAAG----
---NTGCCCANNGGTNA
 T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTCMTGSCMAAAG--
---ATGCCCTGAGGC
 T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G A C G T A C G T
A C G T A C G T A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTCMTGSCMAAAG----
---CCGCCCAAGGGCAG
 T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CTCMTGSCMAAAG----
---NTGCCCTAGGGCAA
 T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A G C T A

E2F7/MA0758.1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CTCMTGSCMAAAG
TTTTCCCGCCAAAA-
 A C G T A C G T T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CTCMTGSCMAAAG---
----TGCCCTNGGGCA
 T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

TFAP2C/MA0524.2/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CTCMTGSCMAAAG---
----TGCCCCAGGGCA
 T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CTCMTGSCMAAAG
--GGTGCCAAGT-
 T G A C A G C T A T G C G T A C A C G T A C T G A T G C G T A C G T A C C T G A G T C A C T G A C T A G
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T