Information for 10-CAGTAACAAG (Motif 13)

A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C T A G A C G T A C G T C G T A A G T C C G A T A C T G
p-value:1e-7
log p-value:-1.823e+01
Information Content per bp:1.939
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.3 +/- 23.0bp
Average Position of motif in Background58.6 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGTAACAAG---
AAAAATAACAAACGG
 A C G T A C G T A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

LBX1/MA0618.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CAGTAACAAG
--TTAATTAG
 A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G
A C G T A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G

PB0050.1_Osr1_1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAGTAACAAG-
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGTAACAAG----
NNNGTAACTANGNNA
 A C G T A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CAGTAACAAG
----AACAAT
 A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAGTAACAAG-----
GANGTTAACTAGTTTNN
 A C G T A C G T A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAGTAACAAG
---NAACAAT
 A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G
A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAGTAACAAG
AATGTATCAAT
 A C G T A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGTAACAAG-
-GTTAACTAGN
 A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGTAACAAG-----
NNNTAACAATTATAN
 A G T C C G T A A C T G A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G