Information for 7-GGATTTTTCA (Motif 5)

A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A
Reverse Opposite:
C A G T T C A G T C G A T G C A C G T A G C T A G C T A A G C T A G T C G T A C
p-value:1e-8
log p-value:-2.052e+01
Information Content per bp:1.819
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif154.6
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets58.0 +/- 27.3bp
Average Position of motif in Background47.6 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGATTTTTCA
GGGAATTTCC-
 A C G T A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGATTTTTCA
GGGGATTTCC-
 A C G T A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGATTTTTCA
GGGAATTTCC-
 A C G T A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGATTTTTCA--
--ATTTTCCATT
 A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A A C G T A C G T
A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGATTTTTCA
GGGGATTTCC-
 A C G T A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGATTTTTCA
NGGGGATTTCCC
 A C G T A C G T A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGATTTTTCA--
--ATTTTCCATT
 A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A A C G T A C G T
A C G T A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGATTTTTCA
---TTTTCCA
 A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A
A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GGATTTTTCA-
NNATTGGACTTTNGNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

PB0148.1_Mtf1_2/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGATTTTTCA-----
-NNTTTTTCTTATNT
 A C T G A C T G T C G A C G A T C G A T A C G T A C G T A G C T A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T