Information for 19-TGGCAGAACCCTG (Motif 24)

A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A C T G A C T G A C G T A C G T A T G C A C G T A C T G A G T C A G T C C G T A
p-value:1e-9
log p-value:-2.138e+01
Information Content per bp:1.909
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.0 +/- 23.1bp
Average Position of motif in Background65.7 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGAACCCTG------
NTTMRCACNNNVSTGYKAANT
 A C G T A C G T A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T A G C T G A C T T G C A C T G A T A G C C T G A A T G C G A T C A G C T T G C A T C A G A T C G G A C T T A C G G A C T A C T G C T G A C T G A G C T A G C A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGAACCCTG
CTTGGCAA-------
 A C G T A C G T A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGAACCCTG
ATTGCACAATA---
 A C G T A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G
T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGAACCCTG
NNTTGGCANN------
 A C G T A C G T A C G T A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGAACCCTG
NTTGGCANN------
 A C G T A C G T A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGAACCCTG
TTGGCA--------
 A C G T A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TGGCAGAACCCTG
VTTRCATAAY----
 A C G T A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G
T C A G G A C T A C G T C T G A G A T C T C G A G A C T G T C A C T G A A G T C A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TGGCAGAACCCTG--
TGACANARRCCAGRC
 A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGAACCCTG
ARNTGACA--------
 A C G T A C G T A C G T A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGAACCCTG
TATCATTAGAACGCT-
 A C G T A C G T A C G T A C G T C T A G C T A G A G T C C G T A A T C G G T C A C G T A A G T C G T A C A G T C A C G T A C T G
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T A C G T