Information for 16-GGTTGCCATGGYG (Motif 19)

A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G
Reverse Opposite:
G A T C T C A G A G T C A G T C G T C A A G C T T A C G C T A G G T A C T G C A C G T A A T G C G T A C
p-value:1e-10
log p-value:-2.390e+01
Information Content per bp:1.689
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.82%
Number of Background Sequences with motif238.3
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets53.1 +/- 20.1bp
Average Position of motif in Background50.4 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGYG-
NGTTGCCATGGCAA
 A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:GGTTGCCATGGYG--
-GTTGCCATGGNAAC
 A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGYG-
GGTTGCCATGGCAA
 A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGYG--
KGTTGCCATGGCAAC
 A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GGTTGCCATGGYG--
CGGTTGCCATGGCAAC
 A C G T A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCCATGGYG
NNCGTTGCTATGGNN
 A C G T A C G T A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGCCATGGYG
CTGTTGCTAGGS--
 A C G T A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGYG---
CGTTGCCATGGCAACN
 A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:9
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGYG---
CGTTGCCATGGCAACG
 A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGYG---
CGTTGCCATGGCAACN
 A C T G A T C G C G A T A C G T A C T G A G T C A T G C T C G A A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G