Information for 6-GCGCAATAAA (Motif 16)

C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A
Reverse Opposite:
A G C T G C A T A C G T C G T A A C G T A C G T T C A G T A G C T A C G A G T C
p-value:1e-11
log p-value:-2.584e+01
Information Content per bp:1.685
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif441.6
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets49.8 +/- 30.3bp
Average Position of motif in Background46.8 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.1/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:forward strand
Alignment:GCGCAATAAA-
--GCAATAAAA
 C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GCGCAATAAA--
--GTCATAAAAN
 C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A A C G T A C G T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCGCAATAAA-
AAGCCATAAAA
 C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

Hoxd9/MA0913.1/Jaspar

Match Rank:4
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GCGCAATAAA--
--GCAATAAAAA
 C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A A C G T A C G T
A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GCGCAATAAA--
-GGTAATAAAAA
 C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A A C G T A C G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCGCAATAAA----
AAAGGTAATAAAATTT
 A C G T A C G T C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCGCAATAAA---
-NGYCATAAAWCH
 C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCGCAATAAA-
-NGCAATTAAA
 C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A A C G T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GCGCAATAAA--
--CCAATAAAAA
 C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A A C G T A C G T
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GCGCAATAAA--
--CCAATAAAAA
 C T A G A T G C A T C G A G T C G T C A T G C A G C A T T G C A C G T A C T G A A C G T A C G T
A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A