Information for 2-CTTTGCCCTAGAT (Motif 2)

G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T
Reverse Opposite:
G C T A C A G T G A T C C G A T C T G A A C T G C T A G A T C G T A G C G T C A G T C A C G T A C T A G
p-value:1e-21
log p-value:-4.921e+01
Information Content per bp:1.640
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif8.65%
Number of Background Sequences with motif1042.3
Percentage of Background Sequences with motif2.16%
Average Position of motif in Targets51.2 +/- 23.3bp
Average Position of motif in Background49.7 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CTTTGCCCTAGAT
TGACCTTTGCCCTAN--
 A C G T A C G T A C G T A C G T G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----CTTTGCCCTAGAT
TGACCTTTGCCCTA---
 A C G T A C G T A C G T A C G T G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CTTTGCCCTAGAT
TGACCTTTGCCCCA---
 A C G T A C G T A C G T A C G T G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CTTTGCCCTAGAT
---TGACCTARTT
 G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CTTTGCCCTAGAT
---TGACCTTGAT
 G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTTTGCCCTAGAT---
--TTGACCTANTTATN
 G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTTTGCCCTAGAT
TGGACTTTGNNCTCN--
 A C G T A C G T A C G T A C G T G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTTTGCCCTAGAT-
GGGTGTGCCCAAAAGG
 A C G T A C G T G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

ESRRB/MA0141.3/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTTTGCCCTAGAT
-NATGACCTTGA-
 G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T
A C G T C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTTTGCCCTAGAT
YCTTTGTTCC----
 A C G T G A T C G A C T C A G T A C G T A T C G A T G C A G T C G T A C G A C T C G T A C T A G G T C A C G A T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T