Information for 17-GAGCAACAGAAAT (Motif 16)

A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T
Reverse Opposite:
G C T A A G C T A C G T A C G T A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T G T A C
p-value:1e-9
log p-value:-2.287e+01
Information Content per bp:1.935
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.3 +/- 22.3bp
Average Position of motif in Background33.6 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAGCAACAGAAAT------
GAAGTANCACGAATNMRAGT
 A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAGCAACAGAAAT
SCCTAGCAACAG----
 A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGCAACAGAAAT
-TGGAACAGMA--
 A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T
A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGCAACAGAAAT--
GAGCAACAGGTGGTT
 A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T A C G T A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

SCRT2/MA0744.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGCAACAGAAAT
ATGCAACAGGTGG
 A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAACAGAAAT
CCGCATAGCAACGGA---
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGCAACAGAAAT-
--GAAACTGAAACT
 A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T A C G T
A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAGCAACAGAAAT-
--GRAASTGAAAST
 A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T A C G T
A C G T A C G T T C A G T C A G G C T A C G T A T A C G G A C T T C A G T C G A C T G A C G T A T A C G G A C T

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGCAACAGAAAT-
--GAAAMTGAAACT
 A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T A C G T
A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.57
Offset:-9
Orientation:forward strand
Alignment:---------GAGCAACAGAAAT-
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G G T C A C G T A C T G A C A G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A