Information for 14-GGGCCATTCTTCA (Motif 13)

C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A
Reverse Opposite:
A C G T C T A G C G T A C G T A A T C G G T C A C G T A A C G T A T C G A C T G A G T C G T A C G T A C
p-value:1e-10
log p-value:-2.472e+01
Information Content per bp:1.816
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.0 +/- 18.3bp
Average Position of motif in Background47.0 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GGGCCATTCTTCA
---CCATTGTTC-
 C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A
A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GGGCCATTCTTCA
--NCCATTGTTC-
 C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GGGCCATTCTTCA
--NCCATTGTTY-
 C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A
A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGGCCATTCTTCA--
ANNTCCATTGTTCNNN
 A C G T C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGGCCATTCTTCA
-RGCCATYAATCA
 C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A
A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGGCCATTCTTCA
---CCATTGTTYB
 C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GGGCCATTCTTCA
-----ATTGTTA-
 C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGGCCATTCTTCA----
CNNNTATTGTTCNNNNN
 C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GGGCCATTCTTCA-
-----ATTGTTTAN
 C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGGCCATTCTTCA----
AATCAATTGTTCCGCTA
 C A T G A C T G A C T G G T A C T A G C C G T A A C G T A C G T A T G C A C G T A C G T A G T C G T C A A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A