Information for 4-CAGCCAGCKA (Motif 9)

T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A
Reverse Opposite:
G A C T G T C A C A T G A G T C G C A T A C T G T A C G A G T C C G A T A T C G
p-value:1e-10
log p-value:-2.473e+01
Information Content per bp:1.640
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif11.94%
Number of Background Sequences with motif2826.2
Percentage of Background Sequences with motif5.86%
Average Position of motif in Targets54.6 +/- 26.6bp
Average Position of motif in Background50.3 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAGCKA
CGTGCCAAG--
 A C G T T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CAGCCAGCKA
-TGCCAA---
 T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGCKA
TGAGTCAGCA-
 A C G T T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGCCAGCKA
TTGCCAAG--
 T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGCCAGCKA
ATGCCAACC-
 T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAGCCAGCKA
ATGCCAGACN
 T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCAGCKA---
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A A C G T A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Mafb/MA0117.2/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAGCCAGCKA---
-NGTCAGCANTTT
 T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A A C G T A C G T A C G T
A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGCKA
BCAGACWA---
 A C G T T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGCCAGCKA-
-TGGCAGTTGN
 T A G C G C T A A C T G A T G C G T A C C G T A C T A G G T A C C A G T C T G A A C G T
A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G