Information for 4-TTGACCCAGT (Motif 3)

A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T
Reverse Opposite:
C G T A T G A C G A C T C T A G C T A G A T C G A C G T A T G C G C T A T G C A
p-value:1e-18
log p-value:-4.201e+01
Information Content per bp:1.622
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif13.32%
Number of Background Sequences with motif2444.2
Percentage of Background Sequences with motif5.15%
Average Position of motif in Targets47.8 +/- 26.0bp
Average Position of motif in Background48.6 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:TTGACCCAGT-
-TGACCTARTT
 A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TTGACCCAGT----
TTGACCTANTTATN
 A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

FOS::JUN/MA0099.2/Jaspar

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:TTGACCCAGT
-TGACTCA--
 A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T
A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TTGACCCAGT
-TGACCT---
 A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TTGACCCAGT-
-TGACCTTGAT
 A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:6
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TTGACCCAGT-------
-TGACCCAGTGACCTAC
 A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TTGACCCAGT
ATGACTCATC
 A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T
T C G A A C G T C A T G G C T A T A G C C G A T G T A C G C T A A C G T A T G C

FOSL2/MA0478.1/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TTGACCCAGT
GGATGACTCAT-
 A C G T A C G T A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T
A C T G T C A G C T G A A C G T A C T G T C G A A T G C A C G T G T A C C G T A A C G T A C G T

Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TTGACCCAGT-
NATGASTCABNN
 A C G T A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T A C G T
C T A G T C G A C G A T A C T G C G T A T A C G A G C T T G A C G C T A A C G T G A T C T A G C

JUNB/MA0490.1/Jaspar

Match Rank:10
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TTGACCCAGT
GGATGACTCAT-
 A C G T A C G T A C G T C G A T T A C G T G C A T A G C G A T C G A T C C T G A A C T G G C A T
C A T G C T A G T C G A A C G T A C T G C G T A A T G C A C G T G T A C C G T A A C G T A C G T