Information for 3-CTKTCMCASTTGGCAD (Motif 4)

A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G
Reverse Opposite:
G A T C C G A T A C T G G T A C A G T C C G T A C T G A T A C G A G C T C A T G A C G T C A T G C T G A G T C A C G T A C T A G
p-value:1e-24
log p-value:-5.557e+01
Information Content per bp:1.674
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.74%
Number of Background Sequences with motif122.4
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets57.8 +/- 19.6bp
Average Position of motif in Background52.1 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.75
Offset:7
Orientation:reverse strand
Alignment:CTKTCMCASTTGGCAD-
-------NNTTGGCANN
 A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.74
Offset:9
Orientation:forward strand
Alignment:CTKTCMCASTTGGCAD
---------TTGGCA-
 A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.73
Offset:8
Orientation:reverse strand
Alignment:CTKTCMCASTTGGCAD-
--------NTTGGCANN
 A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.69
Offset:8
Orientation:reverse strand
Alignment:CTKTCMCASTTGGCAD
--------CTTGGCAA
 A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:CTKTCMCASTTGGCAD
-------GGTTGGCAT
 A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Creb3l2/MA0608.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CTKTCMCASTTGGCAD
-----ACACGTGGC--
 A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T G C T A A T G C C G T A A G T C A C T G A C G T A T C G C A T G G T A C A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTKTCMCASTTGGCAD
----AACAGATGGC--
 A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G
A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:CTKTCMCASTTGGCAD
-------ARNTGACA-
 A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTKTCMCASTTGGCAD
-----VCAGCTGBNN-
 A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTKTCMCASTTGGCAD
NNTGTTTATTTTGGCA-
 A C G T A G T C C G A T A C G T G A C T G T A C G T C A G T A C C T G A A T G C G A C T A C G T A C T G A C T G G T A C C G T A C T A G
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T