Information for 18-CGGATTATCCAGC (Motif 31)

A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G A C T G C T G A A C G T G T C A C G T A A C G T A G T C A G T C A C T G
p-value:1e-8
log p-value:-1.978e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 20.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0126.1_Obox6/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CGGATTATCCAGC
AAAAACGGATTATTG---
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CGGATTATCCAGC
CGGATTAN-----
 A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CGGATTATCCAGC
CGTTGGGGATTAGCCT--
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGGATTATCCAGC
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGGATTATCCAGC
-GGATTAGC----
 A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGGATTATCCAGC
NGGATTAA-----
 A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CGGATTATCCAGC
NNGGATTAGN----
 A C G T A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGGATTATCCAGC
GNGGATTAGN----
 A C G T A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CGGATTATCCAGC
TTGCCCGGATTAGG----
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGGATTATCCAGC
GGGATTAA-----
 A G T C C T A G A C T G G T C A A C G T A C G T C G T A A G C T A G T C A G T C C G T A A C T G A G T C
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T A C G T A C G T