Information for 13-AGACTGAATTATRWTT (Motif 15)

C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T
Reverse Opposite:
C T G A C T G A C G T A A G T C C G T A A G C T C T G A G T C A A C G T A C G T A T G C C G T A A C T G A C G T A G T C A C G T
p-value:1e-11
log p-value:-2.734e+01
Information Content per bp:1.804
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.3 +/- 25.0bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGACTGAATTATRWTT
-NNCTNAATTATGANN
 C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T
A C G T G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:AGACTGAATTATRWTT
----TGAATTATGCAT
 C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T
A C G T A C G T A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACTGAATTATRWTT
NNNTATTGAATTGNNN--
 A C G T A C G T C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T A C G T A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGACTGAATTATRWTT---
---GCTAATTATAATTATC
 C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0069.1_Sox21_1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGACTGAATTATRWTT---
---NNTAATTATAATNANN
 C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

PB0079.1_Sry_1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGACTGAATTATRWTT---
---TATAATTATAATATTC
 C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGACTGAATTATRWTT
ACTATGAATGAATGAT----
 A C G T A C G T A C G T A C G T C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGACTGAATTATRWTT
NNNANTGA---------
 A C G T C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

JUN(var.2)/MA0489.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGACTGAATTATRWTT
AGGAGATGACTCAT----
 A C G T A C G T C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T
C T G A C T A G C T A G C T G A C T A G T C G A A C G T A C T G C G T A A T G C C G A T G T A C C G T A A C G T A C G T A C G T A C G T A C G T

JUND/MA0491.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGACTGAATTATRWTT
--GGTGACTCATC---
 C G T A C T A G C G T A T A G C A C G T A T C G C G T A C G T A A C G T A G C T C T G A A C G T C T A G C G A T A G C T A G C T
A C G T A C G T C T A G T C A G A C G T A C T G C G T A A T G C A C G T G T A C C G T A A G C T T A G C A C G T A C G T A C G T