Information for 11-CGGGTCCCTG (Motif 19)

A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G
Reverse Opposite:
A G T C G T C A A C T G A C T G A C T G C G T A A G T C G T A C A G T C A T C G
p-value:1e-7
log p-value:-1.834e+01
Information Content per bp:1.850
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif128.1
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets46.5 +/- 25.8bp
Average Position of motif in Background49.4 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CGGGTCCCTG-
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A C G T A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGGGTCCCTG
-AGGTCA---
 A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGGGTCCCTG----
NAGGTCANTGACCT
 A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G A C G T A C G T A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CGGGTCCCTG-
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A C G T A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGGGTCCCTG---
-AGGTCTCTAACC
 A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G A C G T A C G T A C G T
A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGGGTCCCTG
BNTGDCCTTG
 A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGGGTCCCTG
NRRGGGTCTT--
 A C G T A C G T A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G
A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGGGTCCCTG-----
GTAGGTCACTGGGTCA
 A C G T A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

GCM1/MA0646.1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CGGGTCCCTG
CATGCGGGTAC---
 A C G T A C G T A C G T A C G T A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGGGTCCCTG-
-CTGTTCCTGG
 A T G C T C A G A C T G A C T G C G A T A G T C G T A C G T A C A C G T A C T G A C G T
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G