Information for 15-AVGGGAGAGATCA (Motif 18)

C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A G T C A C G T A T G C C G A T A G T C A G T C G T A C A C T G A C G T
p-value:1e-8
log p-value:-1.949e+01
Information Content per bp:1.846
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.6 +/- 20.2bp
Average Position of motif in Background45.5 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AVGGGAGAGATCA
TAGGGCAAAGGTCA
 A C G T C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AVGGGAGAGATCA-----
-AAGGCGAAATCATCGCA
 C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AVGGGAGAGATCA
-----TRAGGTCA
 C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AVGGGAGAGATCA
-----AGRGGTCA
 C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AVGGGAGAGATCA-
--NGATGACGTCAT
 C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A A C G T
A C G T A C G T C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.59
Offset:6
Orientation:forward strand
Alignment:AVGGGAGAGATCA-
------AAGGTCAC
 C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AVGGGAGAGATCA
-ANGNAAAGGTCA
 C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A
A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AVGGGAGAGATCA----
GACAGAGATATCAGTGT
 C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AVGGGAGAGATCA
GTAGGGCAAAGGTCA
 A C G T A C G T C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AVGGGAGAGATCA-----
-GGCGAGGGGTCAAGGGC
 C G T A T G A C C A T G A C T G A C T G C G T A A T C G C G T A A C T G G T C A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C