Information for 20-GGCTAAGCTRGCT (Motif 30)

A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T
Reverse Opposite:
T G C A C T A G T G A C A G C T G T C A A C T G A G T C A G C T C G A T G C T A A T C G T G A C A G T C
p-value:1e-10
log p-value:-2.323e+01
Information Content per bp:1.644
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets44.3 +/- 25.6bp
Average Position of motif in Background53.2 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GGCTAAGCTRGCT
----AAGCTTG--
 A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGCTAAGCTRGCT--
---CAAGATGGCGGC
 A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGCTAAGCTRGCT--
---CAAGATGGCGGC
 A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

PB0126.1_Gata5_2/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGCTAAGCTRGCT----
GACAGAGATATCAGTGT
 A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----GGCTAAGCTRGCT
AGGGGGATTAGCTGCC-
 A C G T A C G T A C G T A C G T A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.49
Offset:-7
Orientation:forward strand
Alignment:-------GGCTAAGCTRGCT
NAAACCGGTTNNAACCGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T
T G A C T C G A C T G A C T G A A T G C G A T C C T A G T A C G G A C T G A C T G A T C T C G A C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GGCTAAGCTRGCT
--NGAAGC-----
 A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T
A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GGCTAAGCTRGCT
GAGGTCAAAGGTCA--
 A C G T A C G T A C G T A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:GGCTAAGCTRGCT
GCTAAAAATAGC-
 A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T

Rxra/MA0512.2/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GGCTAAGCTRGCT
GGGGTCAAAGGTCA--
 A C G T A C G T A C G T A C T G A C T G T A G C C G A T C G T A C T G A T A C G T G A C C A G T T C G A A C T G A G T C A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T A C G T