Information for 12-GCAATAGAAG (Motif 19)

C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G
Reverse Opposite:
A G T C C G A T A C G T A G T C A G C T C G T A A C G T C A G T A C T G A G T C
p-value:1e-12
log p-value:-2.911e+01
Information Content per bp:1.847
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets49.8 +/- 30.2bp
Average Position of motif in Background39.5 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCAATAGAAG
AAGCCATAAAA-
 A C G T A C G T C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCAATAGAAG
GCAATAAAA-
 C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCAATAGAAG
GTCATAAAAN
 C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCAATAGAAG
GGTAATAAAAA
 A C G T C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCAATAGAAG---
AGAGCCATAAAATTCG
 A C G T A C G T A C G T C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCAATAGAAG--
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C G T C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCAATAGAAG
GCAATAAAAA
 C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCAATAGAAG
CCAATAAAAA
 C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCAATAGAAG
CCAATAAAAA
 C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

TATA-Box(TBP)/Promoter/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCAATAGAAG-
GNCTATAAAAGG
 A C G T C T A G A G T C G C T A C G T A A C G T C T G A C T A G T C G A C G T A C T A G A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G