Information for 3-CYCTCCTCTCTGACCT (Motif 18)

A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T
Reverse Opposite:
C T G A A C T G C A T G A G C T A G T C C G T A C T A G G T C A C T A G C T G A C T A G A C T G C T G A A C T G C T G A C T A G
p-value:1e-12
log p-value:-2.933e+01
Information Content per bp:1.804
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets40.2 +/- 17.3bp
Average Position of motif in Background40.3 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CYCTCCTCTCTGACCT--
---TGACCTTTGCCCTAN
 A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T A C G T A C G T
A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CYCTCCTCTCTGACCT-
---TGACCTTTGCCCTA
 A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T A C G T
A C G T A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CYCTCCTCTCTGACCT-
---TGACCTTTGACCTC
 A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T A C G T
A C G T A C G T A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

NR2C2/MA0504.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CYCTCCTCTCTGACCT--
---TGACCTCTGACCCCN
 A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T A C G T A C G T
A C G T A C G T A C G T G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CYCTCCTCTCTGACCT--
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T A C G T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CYCTCCTCTCTGACCT-
---TGACCTTTGCCCCA
 A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T A C G T
A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CYCTCCTCTCTGACCT--
GCCTCCTCCMTCWGACTGKS
 A C G T A C G T A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CYCTCCTCTCTGACCT---
---TGGACTTTGNNCTNTG
 A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.53
Offset:10
Orientation:reverse strand
Alignment:CYCTCCTCTCTGACCT--
----------TGACCTYA
 A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PAX5/MA0014.2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CYCTCCTCTCTGACCT-
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A G T C A G C T A G T C A G C T A G T C A G T C A G C T A G T C A C G T A G T C C G A T A C T G T C G A G A T C A G T C A G C T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C