Information for 13-GAGAACATTGTGT (Motif 13)

A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T
Reverse Opposite:
G T C A T A G C G C T A T A G C C G T A G T C A C G A T T A C G G C A T G A C T G T A C G C A T G T A C
p-value:1e-13
log p-value:-3.190e+01
Information Content per bp:1.672
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets52.1 +/- 26.2bp
Average Position of motif in Background52.0 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GAGAACATTGTGT--
VAGRACAKWCTGTYC
 A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T A C G T A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

NR3C2/MA0727.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GAGAACATTGTGT----
GGGAACATTGTGTTCCC
 A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T A C G T A C G T A C G T A C G T
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GAGAACATTGTGT--
AAGAACATWHTGTTC
 A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T A C G T A C G T
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

NR3C1/MA0113.3/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GAGAACATTGTGT----
NGGAACATNATGTACCC
 A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T A C G T A C G T A C G T A C G T
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GAGAACATTGTGT--
VAGRACAKNCTGTBC
 A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GAGAACATTGTGT---
NAGNACANNNTGTNCT
 A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T A C G T A C G T A C G T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GAGAACATTGTGT---
NAGAACAGNCTGTNCT
 A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T A C G T A C G T A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

Ar/MA0007.3/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GAGAACATTGTGT----
GGGAACACGGTGTACCC
 A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GAGAACATTGTGT
---CTCATTGTC-
 A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAGAACATTGTGT---
-NNNCCATTGTGTNAN
 A C T G C G T A C A T G C T G A C G T A A G T C G C T A C A G T G A C T A T C G C G A T A C T G C A G T A C G T A C G T A C G T
A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G