Information for 5-AGAGGGCGCC (Motif 3)

G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C
Reverse Opposite:
A C T G T A C G A G T C A C T G A G T C G T A C A G T C G A C T A G T C C G A T
p-value:1e-13
log p-value:-3.092e+01
Information Content per bp:1.749
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.58%
Number of Background Sequences with motif220.2
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets56.7 +/- 26.6bp
Average Position of motif in Background49.5 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:AGAGGGCGCC
--AGCGCGCC
 G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCGCC-----
TTGGGGGCGCCCCTAG
 A C G T G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

PB0094.1_Zfp128_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGGCGCC-----
TTNGGGTACGCCNNANN
 A C G T A C G T G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGGCGCC----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGGCGCC---
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A C G T G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCGCC-----
ANCGCGCGCCCTTNN
 G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCGCC
CAAGATGGCGGC
 A C G T A C G T G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.59
Offset:-8
Orientation:forward strand
Alignment:--------AGAGGGCGCC-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PB0010.1_Egr1_1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGGCGCC
ANTGCGGGGGCGGN
 A C G T A C G T A C G T A C G T G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

E2F3/MA0469.2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCGCC------
AAAAATGGCGCCATTTTT
 A C G T A C G T G C T A C T A G C T G A A C T G C A T G C T A G G T A C C T A G A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T