Information for 2-AGGNCARAGGKCA (Motif 2)

T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A
Reverse Opposite:
C G A T A C T G T G A C G T A C A G T C A C G T A G T C C G A T A T C G T G A C G A T C A G T C A G C T
p-value:1e-33
log p-value:-7.607e+01
Information Content per bp:1.650
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif9.33%
Number of Background Sequences with motif818.9
Percentage of Background Sequences with motif1.68%
Average Position of motif in Targets48.0 +/- 24.5bp
Average Position of motif in Background52.1 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-AGGNCARAGGKCA
TAGGGCAAAGGTCA
 A C G T T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--AGGNCARAGGKCA
GTAGGGCAAAGGTCA
 A C G T A C G T T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-AGGNCARAGGKCA
TGGGGCAAAGGTCA
 A C G T T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-AGGNCARAGGKCA
GAGGTCAAAGGTCA
 A C G T T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

NR2C2/MA0504.1/Jaspar

Match Rank:5
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--AGGNCARAGGKCA
AGGGGTCAGAGGTCA
 A C G T A C G T T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-AGGNCARAGGKCA
GAGGTCAAAGGTCA
 A C G T T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGGNCARAGGKCA
GGGGTCAAAGGTCA
 A C G T T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGGNCARAGGKCA
GGGGTCAAAGGTCA
 A C G T T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGGNCARAGGKCA
GGGGTCAAAGGTCA
 A C G T T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--AGGNCARAGGKCA--
AAAGGTCAAAGGTCAAC
 A C G T A C G T T C G A A C T G C T A G A C T G T A G C C G T A T C A G C G T A C T A G C A T G A C T G T G A C G C T A A C G T A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C