Information for 5-AGARGTCACAHTG (Motif 5)

C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G
Reverse Opposite:
A T G C G T C A C A G T C A G T C T A G G C A T C T A G C T G A A G T C G A C T A C G T A G T C G C A T
p-value:1e-15
log p-value:-3.574e+01
Information Content per bp:1.673
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.45%
Number of Background Sequences with motif238.8
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets52.2 +/- 26.6bp
Average Position of motif in Background49.0 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGARGTCACAHTG
AGRGGTCA-----
 C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AGARGTCACAHTG----
--AGGTCACCCTGACCT
 C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGARGTCACAHTG
TRAGGTCA-----
 C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGARGTCACAHTG
-AAGGTCAC----
 C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AGARGTCACAHTG
TCTCAAAGGTCACCTG-
 A C G T A C G T A C G T A C G T C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGARGTCACAHTG---
-NAGGTCACNNTGACC
 C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G A C G T A C G T A C G T
A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

Nr2e1/MA0676.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGARGTCACAHTG
AAAAGTCAA----
 C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AGARGTCACAHTG
TCTCAAAGGTCACGAG-
 A C G T A C G T A C G T A C G T C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGARGTCACAHTG
CAAAGGTCAAGGG-
 A C G T C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGARGTCACAHTG
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C G T A T C A G C G T A C T A G A C T G A G C T A G T C C G T A G A T C G T C A G C T A A C G T A T C G
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C