Information for 14-GATTTAAGAG (Motif 27)

A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G
Reverse Opposite:
A G T C C G A T A G T C A G C T A C G T C G T A C G T A C G T A A C G T A G T C
p-value:1e-6
log p-value:-1.419e+01
Information Content per bp:1.926
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets35.9 +/- 24.6bp
Average Position of motif in Background62.6 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GATTTAAGAG-
NTTTTACGAGN
 A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GATTTAAGAG----
ANATTTTACGAGNNNN
 A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GATTTAAGAG----
NAATTTTACGAGNTNN
 A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PB0184.1_Tbp_2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GATTTAAGAG---
CCGATTTAAGCGACC
 A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G A C G T A C G T A C G T
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GATTTAAGAG
TGATTTATGGC
 A C G T A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

NKX3-2/MA0122.2/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GATTTAAGAG--
---TTAAGTGGN
 A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GATTTAAGAG-
NTGATTTATGGCC
 A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GATTTAAGAG-
TGATTTATGGCC
 A C G T A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GATTTAAGAG-
DGWTTTATGRCN
 A C G T A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GATTTAAGAG--
---TTAAGTGGT
 A C T G G T C A A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T