Information for 5-TCCTTTSTMT (Motif 9)

C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T
Reverse Opposite:
T G C A A C G T C G T A A T G C G T C A C G T A G T C A T A C G T C A G G T C A
p-value:1e-11
log p-value:-2.657e+01
Information Content per bp:1.728
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.75%
Number of Background Sequences with motif202.0
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets42.0 +/- 26.5bp
Average Position of motif in Background48.7 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--TCCTTTSTMT----
ANTCCTTTGTCTNNNN
 A C G T A C G T C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T A C G T A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TCCTTTSTMT-
-CCTTTGTTTT
 C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TCCTTTSTMT
-CCTTTGTT-
 C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TCCTTTSTMT
-CCWTTGTY-
 C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TCCTTTSTMT
NNGCACCTTTCTCC
 A C G T A C G T A C G T A C G T C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TCCTTTSTMT
NCCATTGTTY
 C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCCTTTSTMT-
-CCATTGTTTT
 C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TCCTTTSTMT----
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TCCTTTSTMT----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TCCTTTSTMT-
-CCWTTGTYYB
 C A G T A G T C A T G C A C G T A C G T C A G T T A C G A C G T T G C A A C G T A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G