Information for 3-GYMWAAKGARATAAAM (Motif 5)

A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C
Reverse Opposite:
A C T G A C G T A C G T A C G T C T G A A C G T A G C T A C G T A T G C G T A C A C G T A C G T C G A T A C G T C T A G A G T C
p-value:1e-13
log p-value:-3.098e+01
Information Content per bp:1.842
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.2 +/- 21.8bp
Average Position of motif in Background37.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0013.1_Cdx2/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GYMWAAKGARATAAAM---
---AAAGGTAATAAAATTT
 A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0012.1_Cdx1/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GYMWAAKGARATAAAM---
---TAAGGTAATAAAATTA
 A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GYMWAAKGARATAAAM
-----AAGCCATAAAA
 A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C
A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.62
Offset:7
Orientation:forward strand
Alignment:GYMWAAKGARATAAAM-
-------GTCATAAAAN
 A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0046.1_Hoxa10/Jaspar

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GYMWAAKGARATAAAM----
----TAGGTAATAAAATTCA
 A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.62
Offset:6
Orientation:forward strand
Alignment:GYMWAAKGARATAAAM-
------GGTAATAAAAA
 A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GYMWAAKGARATAAAM-----
----AATGCAATAAAATTTAT
 A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.62
Offset:7
Orientation:forward strand
Alignment:GYMWAAKGARATAAAM
-------GCAATAAAA
 A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

GATA3/MA0037.2/Jaspar

Match Rank:9
Score:0.61
Offset:8
Orientation:forward strand
Alignment:GYMWAAKGARATAAAM
--------AGATAAGA
 A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A

PB0012.1_Elf3_1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GYMWAAKGARATAAAM
-AACAAGGAAGTAA--
 A C T G G A T C G T C A C G T A G T C A C G T A A C T G A T C G C G T A C T G A C G T A A G C T C G T A C G T A C G T A T G A C
A C G T C G A T C G T A G T A C T G C A T G C A C T A G C A T G C G T A G C T A T C A G G A C T C G T A T C G A A C G T A C G T