Information for 4-CATWGCATTCAWA (Motif 4)

A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C T G
p-value:1e-13
log p-value:-3.045e+01
Information Content per bp:1.920
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.2 +/- 26.4bp
Average Position of motif in Background89.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CATWGCATTCAWA-
CCATTGTATGCAAAT
 A C G T A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CATWGCATTCAWA----
GACCACATTCATACAAT
 A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CATWGCATTCAWA-----
----ACATTCATGACACG
 A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CATWGCATTCAWA-
-----NATTCAAAT
 A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CATWGCATTCAWA
GGGATTGCATNN---
 A C G T A C G T A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CATWGCATTCAWA--
NNCATTCATTCATNNN
 A C G T A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PB0169.1_Sox15_2/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CATWGCATTCAWA
TNGAATTTCATTNAN-
 A C G T A C G T A C G T A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A
A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CATWGCATTCAWA
---CACATTCCAT
 A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A
A C G T A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CATWGCATTCAWA
---CGGTTTCAAA
 A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

TEAD3/MA0808.1/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CATWGCATTCAWA
----ACATTCCA-
 A G T C C G T A A C G T C G A T C T A G A G T C C G T A A C G T A C G T A G T C C G T A G C A T C G T A
A C G T A C G T A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A A C G T