Information for 6-RCCCCRCRGCKGCAGY (Motif 13)

C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C
Reverse Opposite:
T C A G G T A C C A G T A C T G G T A C T G A C A C T G G A T C G A C T A C T G A G C T T C A G T A C G T C A G T A C G G A T C
p-value:1e-9
log p-value:-2.092e+01
Information Content per bp:1.497
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif12.63%
Number of Background Sequences with motif1870.6
Percentage of Background Sequences with motif3.90%
Average Position of motif in Targets47.0 +/- 24.9bp
Average Position of motif in Background50.4 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:forward strand
Alignment:RCCCCRCRGCKGCAGY
----CGCAGCTGCG--
 C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C
A C G T A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:RCCCCRCRGCKGCAGY--
-CTCAGCAGCTGCTACTG
 C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C A C G T A C G T
A C G T A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:RCCCCRCRGCKGCAGY
----AGCAGCTGCTNN
 C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C
A C G T A C G T A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Myog/MA0500.1/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:RCCCCRCRGCKGCAGY
----GACAGCTGCAG-
 C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C
A C G T A C G T A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.63
Offset:5
Orientation:forward strand
Alignment:RCCCCRCRGCKGCAGY
-----NCAGCTGCTG-
 C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:6
Score:0.63
Offset:4
Orientation:forward strand
Alignment:RCCCCRCRGCKGCAGY
----AACAGCTGCAG-
 C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C
A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:RCCCCRCRGCKGCAGY
----AGCAGCTGCT--
 C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C
A C G T A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:RCCCCRCRGCKGCAGY
------CAGCTGNT--
 C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:RCCCCRCRGCKGCAGY
--NNVVCAGCTGBN--
 C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C
A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:RCCCCRCRGCKGCAGY
---NNACAGCTGC---
 C T A G A T G C A G T C A T G C A G T C T C G A T G A C C T G A C T A G T G A C A C T G C A T G G T A C G T C A A C T G A G T C
A C G T A C G T A C G T C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T A C G T