Information for 11-CGGCANWCAGAGA (Motif 11)

A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A
Reverse Opposite:
A C G T G A T C C A G T A G T C A C G T A C T G G C A T T A C G A C G T A C T G A G T C A G T C A T C G
p-value:1e-10
log p-value:-2.312e+01
Information Content per bp:1.744
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif3.16%
Number of Background Sequences with motif56.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets50.2 +/- 25.8bp
Average Position of motif in Background47.6 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CGGCANWCAGAGA
NGTGGGCAT-------
 A C G T A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CGGCANWCAGAGA
GGTTGGCAT-------
 A C G T A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGGCANWCAGAGA
SCTGTCAVTCAV---
 A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGGCANWCAGAGA-
CGAAGCACACAAAATA
 A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CGGCANWCAGAGA
TNNGGGCAG-------
 A C G T A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CGGCANWCAGAGA
NNTTGGCANN------
 A C G T A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CGGCANWCAGAGA
NNNNTTGGGCACNNCN---
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGGCANWCAGAGA
NTTGGCANN------
 A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CGGCANWCAGAGA-
AGCGGCACACACGCAA
 A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGGCANWCAGAGA-
TGGCAGNCTGCCAG
 A T G C A C T G A C T G A G T C C G T A A C G T C G T A T A G C C G T A A C T G G C T A C T A G G T C A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G